GOcats 1.2.1 documentation
Index
Contents
Index
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A
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B
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C
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D
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F
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G
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I
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J
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L
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N
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O
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P
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R
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S
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U
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V
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W
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__init__() (gocats.dag.AbstractEdge method)
(gocats.dag.AbstractNode method)
(gocats.dag.AbstractRelationship method)
(gocats.dag.DirectionalRelationship method)
(gocats.dag.NonDirectionalRelationship method)
(gocats.dag.OboGraph method)
(gocats.godag.GoGraph method)
(gocats.godag.GoGraphNode method)
(gocats.ontologyparser.GoParser method)
(gocats.ontologyparser.OboParser method)
(gocats.subdag.CategoryNode method)
(gocats.subdag.SubGraph method)
(gocats.subdag.SubGraphNode method)
__weakref__ (gocats.dag.AbstractEdge attribute)
(gocats.dag.AbstractNode attribute)
(gocats.dag.AbstractRelationship attribute)
(gocats.dag.OboGraph attribute)
(gocats.ontologyparser.OboParser attribute)
_update_ancestors() (gocats.dag.AbstractNode method)
_update_descendants() (gocats.dag.AbstractNode method)
_update_graph() (gocats.dag.OboGraph method)
_update_node() (gocats.dag.AbstractNode method)
A
AbstractEdge (class in gocats.dag)
AbstractNode (class in gocats.dag)
AbstractRelationship (class in gocats.dag)
actor_node (gocats.dag.AbstractEdge attribute)
add_edge() (gocats.dag.AbstractNode method)
(gocats.dag.OboGraph method)
add_node() (gocats.dag.OboGraph method)
(gocats.subdag.SubGraph method)
add_relationship() (gocats.dag.OboGraph method)
ancestors (gocats.dag.AbstractNode attribute)
B
build_graph() (in module gocats.gocats)
build_graph_interpreter() (in module gocats.gocats)
C
categorize_dataset() (in module gocats.gocats)
CategoryNode (class in gocats.subdag)
child_id (gocats.dag.AbstractEdge attribute)
child_node (gocats.dag.AbstractEdge attribute)
connect_nodes() (gocats.dag.AbstractEdge method)
connect_subnodes() (gocats.subdag.SubGraph method)
conservatively_extend_subgraph() (gocats.subdag.SubGraph method)
content_mapping (gocats.subdag.SubGraph attribute)
create_subgraphs() (in module gocats.gocats)
D
definition (gocats.subdag.SubGraphNode attribute)
descendants (gocats.dag.AbstractNode attribute)
DirectionalRelationship (class in gocats.dag)
F
filter_edges() (gocats.dag.OboGraph method)
filter_nodes() (gocats.dag.OboGraph method)
find_category_subsets() (in module gocats.gocats)
find_representative_nodes() (gocats.subdag.SubGraph static method)
forward() (gocats.dag.DirectionalRelationship method)
forward_node (gocats.dag.AbstractEdge attribute)
from_filtered_graph() (gocats.subdag.SubGraph static method)
G
gocats.dag (module)
gocats.gocats (module)
gocats.godag (module)
gocats.ontologyparser (module)
gocats.subdag (module)
gocats.tools (module)
GoGraph (class in gocats.godag)
GoGraphNode (class in gocats.godag)
GoParser (class in gocats.ontologyparser)
greedily_extend_subgraph() (gocats.subdag.SubGraph method)
I
id (gocats.subdag.SubGraphNode attribute)
instantiate_valid_edges() (gocats.dag.OboGraph method)
J
json_edge (gocats.dag.AbstractEdge attribute)
json_format_graph() (in module gocats.gocats)
json_save() (in module gocats.tools)
jsonpickle_load() (in module gocats.tools)
jsonpickle_save() (in module gocats.tools)
L
leaves (gocats.dag.OboGraph attribute)
list_to_file() (in module gocats.tools)
N
name (gocats.subdag.SubGraphNode attribute)
namespace (gocats.subdag.SubGraphNode attribute)
node_depth() (gocats.dag.OboGraph method)
nodes_between() (gocats.dag.OboGraph method)
NonDirectionalRelationship (class in gocats.dag)
O
OboGraph (class in gocats.dag)
OboParser (class in gocats.ontologyparser)
obsolete (gocats.subdag.SubGraphNode attribute)
ordinal_post_node (gocats.dag.AbstractEdge attribute)
ordinal_prior_node (gocats.dag.AbstractEdge attribute)
orphans (gocats.dag.OboGraph attribute)
other_node (gocats.dag.AbstractEdge attribute)
P
parent_id (gocats.dag.AbstractEdge attribute)
parent_node (gocats.dag.AbstractEdge attribute)
parse() (gocats.ontologyparser.GoParser method)
parse_gaf() (in module gocats.tools)
R
recipient_node (gocats.dag.AbstractEdge attribute)
remap_goterms() (in module gocats.gocats)
remove_edge() (gocats.dag.AbstractNode method)
(gocats.dag.OboGraph method)
remove_node() (gocats.dag.OboGraph method)
remove_orphan_paths() (gocats.subdag.SubGraph method)
reverse() (gocats.dag.DirectionalRelationship method)
reverse_node (gocats.dag.AbstractEdge attribute)
root_id_mapping (gocats.subdag.SubGraph attribute)
root_node_mapping (gocats.subdag.SubGraph attribute)
S
SubGraph (class in gocats.subdag)
SubGraphNode (class in gocats.subdag)
subnode() (gocats.subdag.SubGraph method)
super_edges (gocats.subdag.SubGraphNode attribute)
U
update_children() (gocats.subdag.SubGraphNode method)
update_parents() (gocats.subdag.SubGraphNode method)
V
valid_edge() (gocats.dag.OboGraph method)
valid_node() (gocats.dag.OboGraph method)
W
write_out_gaf() (in module gocats.tools)
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